Welcome to the forum!
No, I don't think there's any way to disable scrolling in certain areas.
But I'm curious how this seems to happen easily in Linux, but not in Windows? Have you figured that out yet? How does scrolling work, if your mouse isn't over a scrollbar? Or do you mean just moving the mouse?
Hhmm, at first, when you said "menu" I thought you meant inside the dialogs, because some dialogs have dropdown menus. Or like if you had a few docked dialogs open, so that a scrollbar is showing in the docking area. But now I'm not sure what you mean. I'm not even sure if "scrolling" is technically what you mean.
Do you know how to make a video, to show us what happens?