I don't know. Maybe someone else can suggest another alternative for you - maybe another program can do what you want?
The only thing I can suggest as far as using Inkscape, is to use the option which preserves the text, and then in Inkscape, replace the colors.
Ooohhh! Looking more closely than I did originally, I see that the colors aren't actually lost. It's just that the paths have become very, very thin, and they look gray. But once you zoom in, you can see the colors. You can easily make the paths wider by adding a stroke, and then adjust the stroke wider.