Not that I understand XML very well, but looking at the objects in the XML Editor, I don't see any differences among all the objects. Those 2 objects look identical to the others. So as far as XML, I don't see any obvious cruft. Although it could be something that's more technical than I can recognize.
The only thing I can think to try would be to move those 2 objects slightly. Even if you press, for example, the up arrow key, and then the down key (so it stays in the same place) for some reason, that sometimes makes something work that didn't before. To be honest, I haven't seen it work in this type of situation. But what the heck? Another "can't hurt to try it" is re-save it in Inkscape.
Other than that, I would look at the cutter. Since one of those objects is the topmost, and the other is the rightmost, maybe there's some kind of border for the machine? Everything is inside the Inkscape page border, but maybe the machine has its own borders? I don't know. I don't have any kind of cutter, so I'm not sure what else might make sense to look at. I'm just brainstorming at this point.
I hope you can figure it out.