Does my explanation makes sense? I can't see any way around it as tracing around each individual spiral would be so time consuming I might as well scrap these designs and start again. Would you agree?
Yes, if the problem happened during the drawing, it will be very hard to remove from the vector.
I like the design very much, but I guess as an artist, it's probably hard to make 2 drawings that are identical. I'm not really an artist. But on tv I've seen painters use a strip of wood, like an old fashioned wood ruler, or something that's raised up from the surface, so they have a place to rest their hand without smudging the work. I haven't noticed exactly how it's set up, but should be easy enough to jerry-rig something, if in fact there's not already some kind of contraption that you can buy at an art store. Unless you change the cloth every time you move your hand, I would worry the cloth would transfer the medium just like the hand.
On the other hand, let's get some input from people who know raster graphics programs better than I do. I have a feeling there might be a way to color correct the scan. I don't know how, but it seems like it should be possible.
However, for the files where you want to apply the design to fabric, there's a special feature of Trace Bitmap that should make it really easy to remove the smudges. For applying the design to fabric....well, I don't know about every way that exists. But for screenprinting, here's the story. That way you made the trace, I don't know if you've ungrouped the trace result, and tried taking it apart to see how it's made, but you could try it.
The way you and I both traced, each color occupies a z-level (not really a layer, but sort of). I think the darkest color is on top, and the lightest on the bottom. And they all overlap each other. Where the darkest color is, there are 32 z-levels of paths, all stacked up. That works fine (apparently) for some kinds of printing. But for applying on fabric using screenprinting, as far as I've heard, you can't have the overlapping.
So if you uncheck Stack Scans, Inkscape cuts all the paths so that there is no overlapping, and each color comes right to the edge of the next, and stops there. Since it does that, it should be fairly easy to select the smudge pieces and delete. I don't know if you could use that for all your purposes, but maybe for some. Maybe for all, I'm just not sure. So if you've already chosen a print shop, or if you're going to use an online service, or whatever, you might want to contact them and ask about how the file needs to be structured. Because for some of your needs, the current scan might be fine, and you just need to uncheck Stack Scans and do a new trace. (And then delete the smudge pieces.)
Keeping my fingers crossed that you don't have to draw it again