Will have a look and update.
What I am doing with the images, is importing them into Maya (3D App) and they definitely come out wrong. Doing the same with Illustrator or even Photoshop is working fine.
I also exported the svg from OmniGraffle and this one comes in as expected.
After running Inkscape from commandline using the incscape.com command, nothing is shown.
The message I am receiving is 'Failed to load requested file'.
Ghostscript:
I never actively installed any ghostscript versions, gimp is also unable to open any. Sooo this need s to be done
After checking back in Illustrator I have to confirm, that the result looks correct.
So there might be a version problem that Maya has with the eps files.
Below you can see the versions from inkscape compared to the result I am getting based on the OmniGraffle Export.