Welcome to the forum!
What happened between the versions is this. In 0.48, when you draw something with Pencil tool with Ellipse shape, automatically, the Pattern Along Path LPE is applied to it. Don't ask me why they did this for 0.92, I have no idea. They must have thought it would be helpful, I guess. But anyway, in 0.92, now the same options for the Pencil tool means that both the PAP LPE and the BSpline LPE are applied to what you draw.
So to achieve the same effect as in 0.48, after you draw something with Pencil tool set to Ellipse shape, you would need to open Path menu > Path Effects. There in the dialog, you'll see that you can remove a path effect by clicking on it to highlight, and then click the minus sign to remove it.
Or what I would suggest instead, is to use the From Clipboard option from the Shape dropdown menu. You would draw your own ellipse. Probably long and skinny would be best, but you can experiment. Do Path menu > Object to Path. Then simply copy it (to put it on the clipboard), and it will be automatically applied to the paths you draw.
You would need to do that per document now, because Inkscape won't remember what you copied, from one file to the next. Well, probably not.... I guess if you had copied the elliptical path to the clipboard immediately before opening a new file, it might remember.